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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
18
ATAC-seq
8
ChIP-seq
Assay category
122
Transcription
18
DNA accessibility
8
DNA binding
Target of assay
4
transcription factor
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
568
February, 2021
280
November, 2017
249
August, 2017
210
June, 2019
207
October, 2019
164
July, 2018
162
May, 2020
141
May, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
41
August, 2021
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
May, 2023
Available data
148
bam
133
bigWig
122
tsv
24
bed narrowPeak
7
fastq
5
bigBed narrowPeak
5
tagAlign
2
bed bed3+
Organism
148
Homo sapiens
Biosample type
84
in vitro differentiated cells
40
tissue
19
primary cell
5
cell line
Organ
50
pancreas
14
epithelium
3
heart
2
embryo
1
connective tissue
Project
147
AMP
1
T1D
Genome assembly (visualization)
148
GRCh38
148
hg19
Lab
148
AMP-T2D consortium
135
Kyle Gaulton, UCSD
Audit category:
73
inconsistent ontology term
BIOSAMPLE
ASSAY
148 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
pancreatic PP cell
2
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
tissue
islet of Langerhans
36
2
cardiac atrium
1
cardiac ventricle
1
primary cell
monocyte
13
pancreatic alpha cell
2
pancreatic beta cell
2
embryonic stem cell
1
pancreatic acinar cell
1
cell line
EndoC_BH1
4
1
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