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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
73
ChIP-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
162
Transcription
73
DNA binding
8
DNA accessibility
1
DNA methylation
Target of assay
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
control
Date released
162
May, 2020
17
December, 2017
16
November, 2017
14
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
November, 2018
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
244
bam
242
bigWig
162
tsv
81
bed narrowPeak
56
fastq
44
bigBed narrowPeak
31
tagAlign
17
bed broadPeak
17
bigBed broadPeak
8
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
244
Homo sapiens
Biosample type
198
tissue
23
cell line
12
in vitro differentiated cells
11
primary cell
Organ
601
pancreas
525
connective tissue
407
adipose tissue
275
epithelium
244
liver
214
heart
211
brain
182
vasculature
179
blood vessel
123
artery
121
kidney
96
limb
66
bone element
53
musculature of body
31
nerve
25
embryo
18
ureter
12
vein
10
spleen
8
skeleton
5
eye
3
blood
3
bodily fluid
1
pericardium
1
pituitary gland
Project
244
AMP
Genome assembly (visualization)
258
hg19
244
GRCh38
Lab
244
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
control
transcription factor
BIOSAMPLE
ASSAY
244 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
147
37
2
1
right lobe of liver
2
5
1
1
2
cell line
HepG2
5
16
1
1
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
5
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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