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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
168
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
60
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
212
bam
211
bigWig
198
bed narrowPeak
123
bigBed narrowPeak
82
tagAlign
43
bed broadPeak
35
bigBed broadPeak
32
bed bed3+
12
fastq
12
tsv
1
tagAlign bed3+
Organism
214
Homo sapiens
Biosample type
203
tissue
11
primary cell
Organ
626
pancreas
556
connective tissue
480
liver
419
adipose tissue
286
epithelium
214
brain
212
heart
186
vasculature
185
kidney
183
blood vessel
127
artery
96
limb
66
bone element
53
musculature of body
44
blood
44
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
5
eye
1
pericardium
1
pituitary gland
Project
214
AMP
Genome assembly (visualization)
214
GRCh38
161
hg19
Lab
214
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
April, 2019
organ_slims!
adrenal gland
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 2 more…
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