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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1188total RNA-seq
  • 1115ChIP-seq
  • 229ATAC-seq
  • 205DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 15WGBS
  • 2Hi-C
Assay category
  • 1312Transcription
  • 1115DNA binding
  • 434DNA accessibility
  • 15DNA methylation
  • 23D chromatin structure
Target of assay
  • 701histone
  • 701histone modification
  • 402transcription factor
  • 358narrow histone mark
  • 343broad histone mark
  • 93RNA binding protein
  • 88recombinant protein
  • 31chromatin remodeller
  • 10control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2710bam
  • 2683bigWig
  • 1514bed narrowPeak
  • 1311tsv
  • 960bigBed narrowPeak
  • 702fastq
  • 263bed broadPeak
  • 254bigBed broadPeak
  • 229tagAlign
  • 225bed bed3+
  • 64xls
  • 15bed bedMethyl
  • 15bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2878Homo sapiens
Biosample type
  • 1701tissue
  • 494primary cell
  • 464cell line
  • 216in vitro differentiated cells
  • 3stem cell
Organ
  • 512liver
  • 501connective tissue
  • 483pancreas
  • 408adipose tissue
  • 277epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2681AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2937hg19
  • 2878GRCh38
  • 5hg18
Lab
  • 2569AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 40missing controlled_by
Audit category:
  • 36inconsistent control read length
  • 6inconsistent control run_type
  • 1inconsistent assembly
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

2878 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue382
liver1475721
islet of Langerhans1714226
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell101212
pancreatic beta cell10912
pancreatic ductal cell413410
pancreatic acinar cell48412
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
hepatocyte14
stem cell
hESC3
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