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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
791
histone modification
790
histone
420
transcription factor
405
narrow histone mark
384
broad histone mark
98
RNA binding protein
88
recombinant protein
32
chromatin remodeller
12
control
5
other context
5
other post-translational modification
Date released
13
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
December, 2018
Available data
32
bam
32
bed narrowPeak
32
bigWig
32
fastq
30
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
32
Homo sapiens
Biosample type
26
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
21
liver
8
blood
8
bodily fluid
2
connective tissue
1
epithelium
Project
32
AMP
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
12
inconsistent control read length
6
inconsistent control run_type
month_released!
December, 2018
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
cell line
HepG2
18
GM12878
8
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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