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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
10
total RNA-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
72
DNA binding
13
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
68
transcription factor
15
RNA binding protein
10
chromatin remodeller
2
histone
2
histone modification
2
narrow histone mark
Date released
February, 2021
27
December, 2018
16
August, 2017
15
January, 2019
13
November, 2018
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2017
Available data
91
bam
90
bigWig
77
fastq
65
bed narrowPeak
63
bigBed narrowPeak
12
tsv
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
92
Homo sapiens
Biosample type
54
cell line
36
tissue
2
primary cell
Organ
609
pancreas
530
liver
268
epithelium
217
brain
205
kidney
202
heart
127
vasculature
123
blood vessel
116
connective tissue
90
limb
64
artery
54
blood
54
bodily fluid
53
musculature of body
38
adipose tissue
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
6
eye
1
pericardium
1
pituitary gland
0
ovary
Project
92
AMP
Genome assembly (visualization)
95
hg19
92
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
cell line
GM12878
54
tissue
white adipose tissue
12
omental fat pad
3
4
1
1
2
subcutaneous adipose tissue
2
4
1
1
adipose tissue
1
1
2
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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