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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1261ChIP-seq
  • 732total RNA-seq
  • 216ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1261DNA binding
  • 856Transcription
  • 423DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 443transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2391bam
  • 2379bigWig
  • 1609bed narrowPeak
  • 998bigBed narrowPeak
  • 951fastq
  • 855tsv
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 241tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2553Homo sapiens
Biosample type
  • 1407tissue
  • 534primary cell
  • 372cell line
  • 243in vitro differentiated cells
  • 3stem cell
Organ
  • 609pancreas
  • 530liver
  • 268epithelium
  • 217brain
  • 205kidney
  • 202heart
  • 127vasculature
  • 123blood vessel
  • 116connective tissue
  • 90limb
  • 64artery
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 38adipose tissue
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2362AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2639hg19
  • 2559GRCh38
  • 5hg18
Lab
  • 2250AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 152inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
month_released!
  • February, 2021
BIOSAMPLE
ASSAY

2559 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
islet of Langerhans252602216
liver7514721
kidney207513
coronary artery3362
left cardiac atrium401
primary cell
monocyte845313
pancreatic alpha cell7101312
pancreatic beta cell7101012
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG226151
GM1287854
EndoC_BH11371
H1-hESC8
Panc1611
in vitro differentiated cells
cardiomyocytes359
adipocyte481
neural progenitor cell13710
pancreatic endoderm134
hepatocyte14
stem cell
hESC3
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