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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
65
DNase-seq
3
total RNA-seq
1
ATAC-seq
Assay category
184
DNA binding
66
DNA accessibility
3
Transcription
Target of assay
181
histone
181
histone modification
112
narrow histone mark
69
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
71
June, 2019
63
November, 2017
30
May, 2019
July, 2019
7
October, 2017
2
March, 2020
2
November, 2018
Available data
251
bam
250
bigWig
247
bed narrowPeak
172
bigBed narrowPeak
82
tagAlign
79
bed broadPeak
71
bigBed broadPeak
65
bed bed3+
15
fastq
3
tsv
1
tagAlign bed3+
Organism
253
Homo sapiens
Biosample type
233
tissue
20
primary cell
Organ
631
pancreas
550
connective tissue
524
liver
412
adipose tissue
289
epithelium
245
heart
205
brain
199
kidney
183
vasculature
179
blood vessel
125
artery
95
limb
66
bone element
54
blood
54
bodily fluid
48
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pituitary gland
Project
253
AMP
Genome assembly (visualization)
253
GRCh38
215
hg19
Lab
253
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
July, 2019
organ_slims!
intestine
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
tissue
brain
11
14
1
muscle of leg
5
13
layer of hippocampus
17
muscle of arm
17
angular gyrus
14
+ See 75 more…
primary cell
skeletal muscle satellite cell
7
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
skeletal muscle cell
1
1
+ See 2 more…
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