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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 1243ChIP-seq
  • 234ATAC-seq
  • 106single cell RNA-seq
  • 20DNase-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 1243DNA binding
  • 254DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 785histone modification
  • 784histone
  • 444transcription factor
  • 399narrow histone mark
  • 384broad histone mark
  • 96RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2749bam
  • 2720bigWig
  • 1422bed narrowPeak
  • 1400tsv
  • 951fastq
  • 788bigBed narrowPeak
  • 246tagAlign
  • 95bed broadPeak
  • 80bigBed broadPeak
  • 71bed bed3+
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2911Homo sapiens
Biosample type
  • 1696tissue
  • 489primary cell
  • 464cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 631pancreas
  • 551connective tissue
  • 529liver
  • 423adipose tissue
  • 276epithelium
  • 233heart
  • 187brain
  • 184vasculature
  • 182blood vessel
  • 126artery
  • 125kidney
  • 66bone element
  • 64limb
  • 54blood
  • 54bodily fluid
  • 31nerve
  • 29embryo
  • 16spleen
  • 12musculature of body
  • 12vein
  • 8skeleton
  • 1pericardium
  • 1pituitary gland
Project
  • 2720AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3026hg19
  • 2917GRCh38
  • 5hg18
Lab
  • 2608AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 174inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
month_released!
  • June, 2019
BIOSAMPLE
ASSAY

2917 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252261
liver1477521
kidney2075
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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