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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
total RNA-seq
80
single cell RNA-seq
59
ATAC-seq
20
ChIP-seq
8
DNase-seq
4
WGBS
2
small RNA-seq
1
Hi-C
Assay category
366
Transcription
67
DNA accessibility
20
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
histone
134
histone modification
69
broad histone mark
narrow histone mark
18
transcription factor
9
RNA binding protein
2
control
Date released
153
July, 2018
100
August, 2017
May, 2021
41
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
12
October, 2018
7
August, 2020
7
September, 2017
6
November, 2018
5
October, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
March, 2020
3
September, 2020
2
March, 2019
2
October, 2019
1
June, 2018
Available data
444
bam
434
bigWig
366
tsv
257
fastq
66
bed narrowPeak
40
bigBed narrowPeak
17
bed bed3+
8
bed broadPeak
7
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
1
hdf5
Organism
458
Homo sapiens
Biosample type
291
tissue
134
primary cell
33
cell line
Organ
531
connective tissue
462
liver
458
pancreas
423
adipose tissue
199
epithelium
175
kidney
167
heart
125
vasculature
122
blood vessel
108
artery
66
bone element
53
blood
53
bodily fluid
49
brain
49
limb
40
musculature of body
18
ureter
16
embryo
10
spleen
8
skeleton
7
nerve
5
eye
2
vein
1
pericardium
Project
446
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
475
hg19
458
GRCh38
Lab
445
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
36
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
May, 2021
target.investigated_as!
histone
narrow histone mark
BIOSAMPLE
ASSAY
458 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
tissue
islet of Langerhans
224
6
22
9
1
body of pancreas
2
4
9
4
2
2
pancreas
1
1
2
2
primary cell
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
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cell line
EndoC_BH1
29
1
1
Panc1
1
1
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