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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1176ChIP-seq
  • 1104total RNA-seq
  • 221ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1228Transcription
  • 1176DNA binding
  • 428DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 718histone modification
  • 717histone
  • 444transcription factor
  • 368narrow histone mark
  • 348broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2683bam
  • 2667bigWig
  • 1529bed narrowPeak
  • 1227tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 157tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2845Homo sapiens
Biosample type
  • 1821tissue
  • 459cell line
  • 387primary cell
  • 181in vitro differentiated cells
  • 3stem cell
Organ
  • 592pancreas
  • 565connective tissue
  • 531liver
  • 424adipose tissue
  • 285epithelium
  • 263heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 27embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2790AMP
  • 50T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2897hg19
  • 2851GRCh38
  • 5hg18
Lab
  • 2677AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 45Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 123inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

2851 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue13822
islet of Langerhans252242216
liver7514721
kidney207513
bone tissue58
cell line
HepG2261511
smooth muscle cell of the coronary artery4528
GM1287854
EndoC_BH112291
H1-hESC8
primary cell
pancreatic alpha cell7101312
pancreatic beta cell7101012
pancreatic ductal cell134410
pancreatic acinar cell84512
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte4841
neural progenitor cell13710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm134
hepatocyte14
stem cell
hESC3
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