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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 1203ChIP-seq
  • 234ATAC-seq
  • 198DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 10WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 1203DNA binding
  • 432DNA accessibility
  • 10DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 410narrow histone mark
  • 392broad histone mark
  • 385transcription factor
  • 79RNA binding protein
  • 73recombinant protein
  • 27chromatin remodeller
  • 12control
  • 2other context
  • 2other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2880bam
  • 2851bigWig
  • 1560bed narrowPeak
  • 1400tsv
  • 926bigBed narrowPeak
  • 872fastq
  • 273bed broadPeak
  • 258bigBed broadPeak
  • 249bed bed3+
  • 246tagAlign
  • 64xls
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 3042Homo sapiens
Biosample type
  • 1837tissue
  • 536primary cell
  • 407cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 629pancreas
  • 565connective tissue
  • 479liver
  • 423adipose tissue
  • 294epithelium
  • 266heart
  • 215brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 42blood
  • 42bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 12vein
  • 10spleen
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2851AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3142hg19
  • 3048GRCh38
  • 5hg18
Lab
  • 2739AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 77missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 4inconsistent assembly
  • 3inconsistent control run_type
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

3048 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252216
liver147711
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG252171
smooth muscle cell of the coronary artery5248
EndoC_BH133131
GM1287842
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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