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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
34
DNase-seq
23
ChIP-seq
9
ATAC-seq
3
WGBS
3
small RNA-seq
Assay category
399
Transcription
43
DNA accessibility
23
DNA binding
3
DNA methylation
Target of assay
17
transcription factor
6
histone
6
histone modification
5
RNA binding protein
4
broad histone mark
2
narrow histone mark
Date released
392
February, 2021
October, 2019
33
June, 2019
16
August, 2017
13
July, 2019
5
May, 2019
5
October, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
467
bam
460
bigWig
398
tsv
54
bed narrowPeak
46
bigBed narrowPeak
38
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
23
fastq
3
bed bedMethyl
3
bigBed bedMethyl
Organism
468
Homo sapiens
Biosample type
466
tissue
2
primary cell
Organ
627
pancreas
566
connective tissue
524
liver
424
adipose tissue
271
epithelium
259
heart
183
kidney
158
vasculature
154
blood vessel
139
brain
107
artery
66
bone element
54
blood
54
bodily fluid
53
musculature of body
44
limb
29
embryo
18
ureter
16
spleen
8
skeleton
6
eye
1
pericardium
Project
468
AMP
Genome assembly (visualization)
469
hg19
468
GRCh38
Lab
468
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
468 results
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total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
muscle of leg
13
5
1
muscle of arm
17
white adipose tissue
12
omental fat pad
4
2
3
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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