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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1261total RNA-seq
  • 1090ChIP-seq
  • 228ATAC-seq
  • 199DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 1Hi-C
Assay category
  • 1385Transcription
  • 1090DNA binding
  • 427DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 635histone modification
  • 634histone
  • 441transcription factor
  • 342broad histone mark
  • 291narrow histone mark
  • 100RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2755bam
  • 2729bigWig
  • 1444bed narrowPeak
  • 1384tsv
  • 951fastq
  • 932bigBed narrowPeak
  • 275bed broadPeak
  • 260bigBed broadPeak
  • 250bed bed3+
  • 206tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hic
Organism
  • 2914Homo sapiens
Biosample type
  • 1698tissue
  • 514primary cell
  • 444cell line
  • 261in vitro differentiated cells
  • 3stem cell
Organ
  • 627pancreas
  • 566connective tissue
  • 524liver
  • 424adipose tissue
  • 271epithelium
  • 259heart
  • 183kidney
  • 158vasculature
  • 154blood vessel
  • 139brain
  • 107artery
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 44limb
  • 29embryo
  • 18ureter
  • 16spleen
  • 8skeleton
  • 6eye
  • 1pericardium
Project
  • 2723AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2996hg19
  • 2920GRCh38
  • 5hg18
Lab
  • 2611AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 178inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

2920 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252216
liver1467021
kidney187513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)18
pancreatic endoderm413
stem cell
hESC3
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