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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
320
ChIP-seq
47
single cell RNA-seq
Assay category
320
DNA binding
47
Transcription
Target of assay
209
transcription factor
108
histone
108
histone modification
66
recombinant protein
65
broad histone mark
43
narrow histone mark
36
RNA binding protein
13
chromatin remodeller
2
other context
2
other post-translational modification
Date released
280
November, 2017
275
May, 2021
207
May, 2020
207
October, 2019
195
June, 2019
184
August, 2017
162
July, 2018
118
February, 2021
105
August, 2021
96
May, 2019
78
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
63
July, 2019
56
November, 2019
47
April, 2018
42
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
13
October, 2017
11
May, 2023
7
August, 2020
7
September, 2017
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
366
bigWig
327
bam
320
bed narrowPeak
280
bigBed narrowPeak
266
fastq
55
bed broadPeak
54
tagAlign
50
bigBed broadPeak
47
tsv
Organism
367
Homo sapiens
Biosample type
217
cell line
103
tissue
47
primary cell
Organ
217
liver
63
brain
40
heart
39
pancreas
37
epithelium
4
vasculature
2
blood vessel
connective tissue
Project
367
AMP
Genome assembly (visualization)
367
GRCh38
328
hg19
Lab
327
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
missing controlled_by
Audit category:
17
inconsistent control read length
2
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
367 results
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Clear Filters
ChIP-seq
single cell RNA-seq
cell line
HepG2
217
tissue
left cardiac atrium
40
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
+ See 3 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 7 more…
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