Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
89
total RNA-seq
13
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
253
DNA binding
89
Transcription
15
DNA accessibility
2
DNA methylation
Target of assay
200
histone modification
199
histone
112
broad histone mark
86
narrow histone mark
51
transcription factor
12
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
358
bam
357
bigWig
263
fastq
226
bed narrowPeak
140
bigBed narrowPeak
89
tsv
33
bed bed3+
23
bed broadPeak
23
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
353
Homo sapiens
Biosample type
264
tissue
49
in vitro differentiated cells
46
primary cell
Organ
158
pancreas
66
connective tissue
39
blood vessel
39
vasculature
32
brain
21
epithelium
19
liver
17
adipose tissue
15
heart
5
limb
5
musculature of body
4
kidney
3
artery
1
spleen
Project
359
AMP
Genome assembly (visualization)
386
hg19
359
GRCh38
Lab
358
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
42
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
359 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
89
1
1
liver
18
ascending aorta
13
temporal lobe
13
angular gyrus
12
+ See 17 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
kidney epithelial cell
4
+ See 1 more…
See all biosamples
Download