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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 151ChIP-seq
  • 89total RNA-seq
  • 5ATAC-seq
  • 2DNase-seq
  • 2WGBS
Assay category
  • 151DNA binding
  • 89Transcription
  • 7DNA accessibility
  • 2DNA methylation
Target of assay
  • 103histone modification
  • 102histone
  • 52narrow histone mark
  • 49broad histone mark
  • 46transcription factor
  • 7RNA binding protein
  • 3chromatin remodeller
  • 2control
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 249bam
  • 249fastq
  • 247bigWig
  • 118bed narrowPeak
  • 89tsv
  • 38bigBed narrowPeak
  • 33bed bed3+
  • 19bed broadPeak
  • 17tagAlign
  • 13bigBed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
Organism
  • 243Homo sapiens
Biosample type
  • 158tissue
  • 49in vitro differentiated cells
  • 42primary cell
Organ
  • 152pancreas
  • 65connective tissue
  • 19liver
  • 17epithelium
  • 16adipose tissue
Project
  • 249AMP
Genome assembly (visualization)
  • 276hg19
  • 249GRCh38
Lab
  • 249AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

249 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans21891
liver18
pancreas12
white adipose tissue12
adipose tissue12
in vitro differentiated cells
adipocyte481
primary cell
skeletal muscle myoblast13
pancreatic endocrine cell12
pancreatic alpha cell71
pancreatic beta cell71
pancreatic acinar cell1
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