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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
16
ChIP-seq
15
total RNA-seq
3
single cell RNA-seq
Assay category
77
DNA accessibility
18
Transcription
16
DNA binding
Target of assay
16
histone
16
histone modification
9
narrow histone mark
7
broad histone mark
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
90
bed narrowPeak
64
xls
44
bam
37
bigWig
18
tsv
16
tagAlign
6
fastq
3
bed bed3+
Organism
111
Homo sapiens
Biosample type
64
tissue
30
in vitro differentiated cells
9
primary cell
8
cell line
Organ
64
kidney
8
embryo
7
epithelium
4
pancreas
3
liver
Project
108
AMP
3
HPAP
Genome assembly (visualization)
111
GRCh38
63
hg19
Lab
64
Katalin Susztak, Upenn
44
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
tissue
kidney
64
in vitro differentiated cells
neural progenitor cell
10
13
7
primary cell
hepatocyte
3
pancreatic alpha cell
2
pancreatic beta cell
1
pancreatic cell
1
pancreatic ductal cell
1
+ See 1 more…
cell line
H1-hESC
8
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