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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
203
total RNA-seq
74
ATAC-seq
Assay category
315
DNA binding
203
Transcription
74
DNA accessibility
Target of assay
204
transcription factor
108
histone
108
histone modification
66
recombinant protein
56
narrow histone mark
52
broad histone mark
31
RNA binding protein
13
chromatin remodeller
2
other context
2
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
528
bam
517
bigWig
389
bed narrowPeak
280
bigBed narrowPeak
223
fastq
203
tsv
89
tagAlign
64
xls
55
bed broadPeak
50
bigBed broadPeak
3
bed bed3+
Organism
592
Homo sapiens
Biosample type
283
tissue
225
cell line
54
primary cell
30
in vitro differentiated cells
Organ
382
liver
64
kidney
63
brain
8
embryo
7
epithelium
4
vasculature
2
blood vessel
Project
547
AMP
45
T1D
Genome assembly (visualization)
601
hg19
592
GRCh38
Lab
483
AMP-T2D consortium
64
Katalin Susztak, Upenn
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
17
inconsistent control read length
2
inconsistent control run_type
month_released!
September, 2017
BIOSAMPLE
ASSAY
592 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
tissue
liver
19
143
kidney
64
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
+ See 3 more…
cell line
HepG2
217
H1-hESC
8
primary cell
hepatocyte
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 24 more…
in vitro differentiated cells
neural progenitor cell
13
7
10
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