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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
30
ChIP-seq
18
small RNA-seq
8
WGBS
6
ATAC-seq
3
single cell RNA-seq
Assay category
65
Transcription
30
DNA binding
8
DNA methylation
6
DNA accessibility
Target of assay
28
transcription factor
3
control
2
RNA binding protein
2
chromatin remodeller
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
109
bam
109
bigWig
65
tsv
35
bed narrowPeak
30
bigBed narrowPeak
30
fastq
8
bed bedMethyl
8
bigBed bedMethyl
Organism
109
Homo sapiens
Biosample type
64
tissue
27
cell line
18
primary cell
Organ
27
blood
27
bodily fluid
21
heart
16
connective tissue
12
adipose tissue
12
brain
8
blood vessel
8
vasculature
7
liver
6
kidney
5
epithelium
5
musculature of body
4
pancreas
3
artery
3
spleen
1
limb
1
pericardium
Project
109
AMP
Genome assembly (visualization)
121
hg19
109
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
1
inconsistent control
month_released!
July, 2018
March, 2020
BIOSAMPLE
ASSAY
109 results
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total RNA-seq
ChIP-seq
small RNA-seq
WGBS
ATAC-seq
single cell RNA-seq
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 21 more…
cell line
GM12878
27
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
cardiac atrium fibroblast
1
+ See 10 more…
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