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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
303
ChIP-seq
187
DNase-seq
Assay category
303
DNA binding
187
DNA accessibility
Target of assay
208
transcription factor
92
histone
92
histone modification
66
recombinant protein
53
broad histone mark
39
narrow histone mark
35
RNA binding protein
13
chromatin remodeller
2
other context
2
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
77
December, 2017
72
September, 2018
67
November, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
16
March, 2020
14
October, 2017
12
May, 2023
11
January, 2019
7
August, 2020
7
September, 2017
November, 2020
5
December, 2019
3
August, 2018
3
December, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
490
bam
490
bed narrowPeak
490
bigBed narrowPeak
489
bigWig
242
bed broadPeak
237
bigBed broadPeak
223
fastq
187
bed bed3+
54
tagAlign
Organism
490
Homo sapiens
Biosample type
220
tissue
217
cell line
53
primary cell
Organ
219
liver
93
brain
80
kidney
41
musculature of body
33
heart
32
limb
22
epithelium
18
ureter
15
connective tissue
11
vasculature
7
blood vessel
6
eye
4
pancreas
2
artery
1
adipose tissue
Project
490
AMP
Genome assembly (visualization)
490
GRCh38
468
hg19
Lab
490
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
17
inconsistent control read length
2
inconsistent control run_type
month_released!
November, 2020
organ_slims!
blood
BIOSAMPLE
ASSAY
490 results
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Clear Filters
ChIP-seq
DNase-seq
tissue
heart
18
muscle of arm
17
layer of hippocampus
16
caudate nucleus
12
1
kidney
13
+ See 38 more…
cell line
HepG2
217
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
+ See 17 more…
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