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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
299
ChIP-seq
188
total RNA-seq
Assay category
299
DNA binding
188
Transcription
Target of assay
204
transcription factor
92
histone
92
histone modification
66
recombinant protein
47
narrow histone mark
45
broad histone mark
31
RNA binding protein
13
chromatin remodeller
2
other context
2
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
February, 2018
30
December, 2018
26
January, 2019
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
487
bam
486
bigWig
299
bed narrowPeak
280
bigBed narrowPeak
223
fastq
188
tsv
73
tagAlign
55
bed broadPeak
50
bigBed broadPeak
Organism
487
Homo sapiens
Biosample type
219
tissue
217
cell line
51
primary cell
Organ
379
liver
63
brain
4
epithelium
4
vasculature
2
blood vessel
Project
442
AMP
45
T1D
Genome assembly (visualization)
541
hg19
487
GRCh38
Lab
442
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
17
inconsistent control read length
2
inconsistent control run_type
month_released!
February, 2018
March, 2020
BIOSAMPLE
ASSAY
487 results
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Clear Filters
ChIP-seq
total RNA-seq
tissue
liver
19
143
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
+ See 2 more…
cell line
HepG2
217
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 23 more…
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