Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1266ChIP-seq
  • 1219total RNA-seq
  • 226ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1343Transcription
  • 1266DNA binding
  • 433DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 448transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 502February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2893bam
  • 2872bigWig
  • 1624bed narrowPeak
  • 1342tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 3055Homo sapiens
Biosample type
  • 1793tissue
  • 536primary cell
  • 464cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2864AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3143hg19
  • 3061GRCh38
  • 5hg18
Lab
  • 2752AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
organ_slims!
  • bone element
BIOSAMPLE
ASSAY

3061 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue13822
islet of Langerhans252602216
liver7514721
kidney207513
coronary artery3362
primary cell
monocyte845313
pancreatic alpha cell7101312
pancreatic beta cell7101012
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2261511
smooth muscle cell of the coronary artery4528
GM1287854
EndoC_BH113331
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte4841
neural progenitor cell13710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm134
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego