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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1191ChIP-seq
  • 809total RNA-seq
  • 229ATAC-seq
  • 198DNase-seq
  • 102single cell RNA-seq
  • 15WGBS
  • 15small RNA-seq
  • 2Hi-C
  • 1snATAC-seq
Assay category
  • 1191DNA binding
  • 926Transcription
  • 428DNA accessibility
  • 15DNA methylation
  • 23D chromatin structure
Target of assay
  • 770histone modification
  • 769histone
  • 408transcription factor
  • 393narrow histone mark
  • 376broad histone mark
  • 90RNA binding protein
  • 88recombinant protein
  • 32chromatin remodeller
  • 11control
  • 5other context
  • 5other post-translational modification
Date released
  • 280November, 2017
  • 275May, 2021
  • 207May, 2020
  • 207October, 2019
  • 195June, 2019
  • 184August, 2017
  • 162July, 2018
  • 118February, 2021
  • 105August, 2021
  • 96May, 2019
  • 78November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 63July, 2019
  • 56November, 2019
  • 47April, 2018
  • 42October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 13October, 2017
  • 11May, 2023
  • 7August, 2020
  • 7September, 2017
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1July, 2025
  • 1March, 2023
Available data
  • 2394bam
  • 2368bigWig
  • 1561bed narrowPeak
  • 973bigBed narrowPeak
  • 927tsv
  • 876fastq
  • 273bed broadPeak
  • 258bigBed broadPeak
  • 246tagAlign
  • 240bed bed3+
  • 64xls
  • 15bed bedMethyl
  • 15bigBed bedMethyl
  • 1bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 2555Homo sapiens
Biosample type
  • 1380tissue
  • 504primary cell
  • 464cell line
  • 211in vitro differentiated cells
  • 3stem cell
Organ
  • 635pancreas
  • connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 54musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2365AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2624hg19
  • 2562GRCh38
  • 5hg18
Lab
  • 2252AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 185inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 62missing controlled_by
Audit category:
  • 46inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

2562 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
snATAC-seq
tissue
islet of Langerhans252602216
liver7514721
kidney207513
coronary artery3362
left cardiac atrium401
primary cell
monocyte845313
pancreatic alpha cell7101312
pancreatic beta cell7101012
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2261511
smooth muscle cell of the coronary artery4528
GM1287854
EndoC_BH113331
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
neural progenitor cell13710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm134
hepatocyte14
stem cell
hESC3
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