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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1201total RNA-seq
  • 1169ChIP-seq
  • 200ATAC-seq
  • 190DNase-seq
  • 36single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
  • 1snATAC-seq
Assay category
  • 1255Transcription
  • 1169DNA binding
  • 391DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 716histone modification
  • 715histone
  • 439transcription factor
  • 362narrow histone mark
  • 352broad histone mark
  • 92RNA binding protein
  • 88recombinant protein
  • 33chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 542February, 2021
  • 276November, 2017
  • 267May, 2021
  • 232August, 2017
  • 207May, 2020
  • 192June, 2019
  • 184October, 2019
  • 131July, 2018
  • 102August, 2021
  • 92May, 2019
  • 79November, 2018
  • 74July, 2019
  • 64April, 2019
  • 61December, 2017
  • 45October, 2018
  • 44November, 2019
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16April, 2018
  • 14October, 2017
  • 13March, 2020
  • 12May, 2023
  • 11September, 2018
  • 6November, 2020
  • 2June, 2018
  • 2March, 2019
  • 2September, 2017
  • 1July, 2025
  • 1March, 2023
Available data
  • 2675bam
  • 2638bigWig
  • 1494bed narrowPeak
  • 1255tsv
  • 923bigBed narrowPeak
  • 770fastq
  • 262bed broadPeak
  • 247bigBed broadPeak
  • 241tagAlign
  • 240bed bed3+
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 2827Homo sapiens
Biosample type
  • 1860tissue
  • 415cell line
  • 311primary cell
  • 245in vitro differentiated cells
  • 3stem cell
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 54musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2651AMP
  • 182T1D
  • 1ITG
Genome assembly (visualization)
  • 2902hg19
  • 2834GRCh38
  • 5hg18
Lab
  • 2534AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 139inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 58missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

2834 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
snATAC-seq
tissue
adipose tissue38212
islet of Langerhans260252216
liver1477521
kidney207513
bone tissue58
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
H1-hESC8
Panc1611
primary cell
monocyte538413
pancreatic endocrine cell23
skeletal muscle myoblast113
skeletal muscle satellite cell171
osteoblast521
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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