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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1118total RNA-seq
  • 906ChIP-seq
  • 231ATAC-seq
  • 202DNase-seq
  • 106single cell RNA-seq
  • 16WGBS
  • 15small RNA-seq
  • 2Hi-C
  • 1snATAC-seq
Assay category
  • 1239Transcription
  • 906DNA binding
  • 434DNA accessibility
  • 16DNA methylation
  • 23D chromatin structure
Target of assay
  • 734histone
  • 734histone modification
  • 369narrow histone mark
  • 364broad histone mark
  • 162transcription factor
  • 49RNA binding protein
  • 13chromatin remodeller
  • 11control
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 567February, 2021
  • 276May, 2021
  • 230August, 2017
  • 208June, 2019
  • 200October, 2019
  • 164July, 2018
  • 102August, 2021
  • 96May, 2019
  • 72July, 2019
  • 72September, 2018
  • 64April, 2019
  • 63November, 2017
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 45May, 2020
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 27December, 2017
  • 27November, 2018
  • 21January, 2019
  • 15March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1July, 2025
  • 1March, 2023
Available data
  • 2428bam
  • 2402bigWig
  • 1265bed narrowPeak
  • 1239tsv
  • 672bigBed narrowPeak
  • 608fastq
  • 248bed bed3+
  • 233bed broadPeak
  • 218bigBed broadPeak
  • 215tagAlign
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 1bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 2590Homo sapiens
Biosample type
  • 1622tissue
  • 525primary cell
  • 251in vitro differentiated cells
  • 196cell line
  • 3stem cell
Organ
  • 635pancreas
  • 566connective tissue
  • liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 54musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2400AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2597GRCh38
  • 2588hg19
  • 5hg18
Lab
  • 2287AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 195inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 74missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 4inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

2597 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
snATAC-seq
tissue
adipose tissue38212
islet of Langerhans260252216
kidney207513
bone tissue58
coronary artery3362
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
cell line
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
Panc1611
stem cell
hESC3
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