Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1273total RNA-seq
  • 1253ChIP-seq
  • 234ATAC-seq
  • 174DNase-seq
  • 106single cell RNA-seq
  • 16WGBS
  • 16small RNA-seq
  • 2Hi-C
Assay category
  • 1395Transcription
  • 1253DNA binding
  • 408DNA accessibility
  • 16DNA methylation
  • 23D chromatin structure
Target of assay
  • 791histone modification
  • 790histone
  • 448transcription factor
  • 405narrow histone mark
  • 384broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • 207May, 2020
  • 207October, 2019
  • 169June, 2019
  • 164July, 2018
  • 105August, 2021
  • 91May, 2019
  • 79November, 2018
  • 77December, 2017
  • 74July, 2019
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 14March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2906bam
  • 2877bigWig
  • 1586bed narrowPeak
  • 1394tsv
  • 952bigBed narrowPeak
  • 951fastq
  • 249bed broadPeak
  • 246tagAlign
  • 234bigBed broadPeak
  • 225bed bed3+
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 3068Homo sapiens
Biosample type
  • 1817tissue
  • 525primary cell
  • 464cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2877AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3140hg19
  • 3074GRCh38
  • 5hg18
Lab
  • 2765AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 188inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
organ_slims!
  • musculature of body
BIOSAMPLE
ASSAY

3074 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252216
liver1477521
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego