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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1109ChIP-seq
  • 953total RNA-seq
  • 199DNase-seq
  • 175ATAC-seq
  • 26single cell RNA-seq
  • 16small RNA-seq
  • 13WGBS
  • 1Hi-C
  • 1snATAC-seq
Assay category
  • 1109DNA binding
  • 995Transcription
  • 375DNA accessibility
  • 13DNA methylation
  • 13D chromatin structure
Target of assay
  • 668histone modification
  • 667histone
  • 429transcription factor
  • 343narrow histone mark
  • 323broad histone mark
  • 91RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 10control
  • 5other context
  • 5other post-translational modification
Date released
  • 542February, 2021
  • 280November, 2017
  • 233May, 2021
  • 207May, 2020
  • 206June, 2019
  • 199October, 2019
  • 105August, 2021
  • 97August, 2017
  • 95May, 2019
  • 77December, 2017
  • 75July, 2019
  • 73November, 2018
  • 64April, 2019
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 12May, 2023
  • 11July, 2018
  • 10April, 2018
  • 10March, 2020
  • 9October, 2017
  • 6November, 2019
  • 6November, 2020
  • 5December, 2019
  • 5October, 2018
  • 2June, 2018
  • 1July, 2025
  • 1March, 2023
Available data
  • 2338bam
  • 2319bigWig
  • 1444bed narrowPeak
  • 995tsv
  • 909bigBed narrowPeak
  • 594fastq
  • 268bed broadPeak
  • 260bigBed broadPeak
  • 238tagAlign
  • 230bed bed3+
  • 64xls
  • 13bed bedMethyl
  • 13bigBed bedMethyl
  • 2bed bed3
  • 1hic
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 2492Homo sapiens
Biosample type
  • 1474tissue
  • 409cell line
  • 344primary cell
  • 263in vitro differentiated cells
  • 3stem cell
Organ
  • pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 54musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2312AMP
  • 180T1D
  • 1ITG
Genome assembly (visualization)
  • 2555hg19
  • 2493GRCh38
  • 5hg18
Lab
  • 2196AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 144inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 25missing controlled_by
Audit category:
  • 43inconsistent control read length
  • 7inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

2493 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
snATAC-seq
tissue
adipose tissue13822
liver7514721
kidney201375
bone tissue58
coronary artery3236
cell line
HepG2261511
smooth muscle cell of the coronary artery4528
GM1287854
H1-hESC8
RCC 7860 HIF1a re-expression31
primary cell
monocyte845313
skeletal muscle myoblast131
endothelial cell of umbilical vein102
epithelial cell of proximal tubule811
hepatocyte351
in vitro differentiated cells
cardiomyocytes359
adipocyte4841
neural progenitor cell13710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm134
stem cell
hESC3
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