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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
14
total RNA-seq
4
DNase-seq
Assay category
17
DNA binding
14
Transcription
4
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
4
transcription factor
1
RNA binding protein
1
control
Date released
10
February, 2018
9
December, 2017
8
August, 2021
6
June, 2019
2
May, 2021
Available data
35
bam
34
bigWig
20
bed narrowPeak
19
fastq
14
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
3
primary cell
3
tissue
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
0
adrenal gland
Project
35
AMP
Genome assembly (visualization)
63
hg19
35
GRCh38
1
hg18
Lab
35
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
2
1
tissue
retina
3
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