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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
19
ChIP-seq
4
DNase-seq
Assay category
54
Transcription
49
DNA accessibility
19
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
17
October, 2019
3
July, 2019
2
June, 2019
1
May, 2019
Available data
87
bam
79
bigWig
68
bed narrowPeak
54
tsv
19
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
122
Homo sapiens
Biosample type
64
cell line
56
tissue
2
primary cell
Organ
568
pancreas
549
connective tissue
490
liver
423
adipose tissue
246
epithelium
227
heart
190
kidney
166
vasculature
163
blood vessel
122
artery
110
brain
83
limb
66
bone element
53
blood
53
bodily fluid
48
musculature of body
23
nerve
22
embryo
18
ureter
14
spleen
8
skeleton
7
vein
5
eye
1
pericardium
0
thymus
Project
122
AMP
Genome assembly (visualization)
122
GRCh38
87
hg19
Lab
122
AMP-T2D consortium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
122 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
36
1
2
tibial artery
1
14
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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