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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
107
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
168
histone
168
histone modification
107
narrow histone mark
broad histone mark
RNA binding protein
3
control
3
transcription factor
Date released
75
October, 2019
30
June, 2019
22
November, 2017
12
July, 2019
10
May, 2019
2
November, 2018
2
October, 2017
Available data
151
bam
151
bigWig
137
bed narrowPeak
65
bigBed narrowPeak
46
tagAlign
39
bed broadPeak
35
bigBed broadPeak
32
bed bed3+
12
tsv
7
fastq
1
tagAlign bed3+
Organism
153
Homo sapiens
Biosample type
142
tissue
11
primary cell
Organ
557
pancreas
540
connective tissue
452
liver
419
adipose tissue
246
epithelium
198
heart
188
kidney
153
brain
145
vasculature
142
blood vessel
113
artery
66
bone element
limb
45
musculature of body
44
blood
44
bodily fluid
25
embryo
18
ureter
15
nerve
12
spleen
8
skeleton
7
vein
5
eye
1
pericardium
1
pituitary gland
Project
153
AMP
Genome assembly (visualization)
153
GRCh38
136
hg19
Lab
153
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
limb
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
3
14
1
angular gyrus
7
layer of hippocampus
7
temporal lobe
5
1
1
caudate nucleus
4
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 2 more…
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