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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 171ChIP-seq
  • 32DNase-seq
  • 5total RNA-seq
  • 4small RNA-seq
  • 3single cell RNA-seq
  • 2ATAC-seq
Assay category
  • 171DNA binding
  • 34DNA accessibility
  • 12Transcription
Target of assay
  • 168histone
  • 168histone modification
  • 107narrow histone mark
  • 61broad histone mark
  • 3RNA binding protein
  • 3control
  • 3transcription factor
Date released
  • 78October, 2019
  • 63November, 2017
  • 30June, 2019
  • 25May, 2019
  • 12July, 2019
  • 7October, 2017
  • 2November, 2018
Available data
  • 215bam
  • 214bigWig
  • 201bed narrowPeak
  • 126bigBed narrowPeak
  • 82tagAlign
  • 46bed broadPeak
  • 38bigBed broadPeak
  • 32bed bed3+
  • 15fastq
  • 12tsv
  • 1tagAlign bed3+
Organism
  • 217Homo sapiens
Biosample type
  • 203tissue
  • 14primary cell
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 217AMP
Genome assembly (visualization)
  • 217GRCh38
  • 164hg19
Lab
  • 217AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
BIOSAMPLE
ASSAY

217 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain11141
layer of hippocampus17
temporal lobe1311
angular gyrus14
caudate nucleus121
primary cell
astrocyte of the cerebellum21
brain microvascular endothelial cell21
choroid plexus epithelial cell21
cerebellar granule cell2
Purkinje cell1
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