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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
57
ChIP-seq
7
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
Assay category
76
Transcription
57
DNA binding
9
DNA accessibility
Target of assay
33
histone
33
histone modification
23
transcription factor
16
broad histone mark
16
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
1
control
Date released
64
February, 2021
49
August, 2017
14
June, 2019
6
November, 2020
4
July, 2019
2
April, 2018
2
July, 2018
1
May, 2021
Available data
142
bam
140
bigWig
76
tsv
60
bed narrowPeak
52
fastq
16
bigBed narrowPeak
13
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
1
bed bed3
Organism
142
Homo sapiens
Biosample type
58
tissue
54
in vitro differentiated cells
30
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
142
AMP
Genome assembly (visualization)
163
hg19
142
GRCh38
Lab
142
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
adipose tissue
artery
BIOSAMPLE
ASSAY
142 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
tissue
bone tissue
58
in vitro differentiated cells
adipocyte
4
48
1
cardiac fibroblast
1
primary cell
osteoblast
5
1
2
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
4
brain pericyte
1
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