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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 468total RNA-seq
  • 75ChIP-seq
  • 9DNase-seq
  • 5ATAC-seq
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2WGBS
Assay category
  • 475Transcription
  • 75DNA binding
  • 14DNA accessibility
  • 2DNA methylation
Target of assay
  • 40transcription factor
  • 34histone
  • 34histone modification
  • 17narrow histone mark
  • 16broad histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
  • 1control
Date released
  • 450February, 2021
  • 65August, 2017
  • 16July, 2019
  • 15June, 2019
  • 6November, 2020
  • 5October, 2018
  • 2April, 2018
  • 2July, 2018
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 565bam
  • 562bigWig
  • 474tsv
  • 75fastq
  • 71bed narrowPeak
  • 25bigBed narrowPeak
  • 19bed bed3+
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
Organism
  • 566Homo sapiens
Biosample type
  • 480tissue
  • 54in vitro differentiated cells
  • 32primary cell
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 566AMP
Genome assembly (visualization)
  • 589hg19
  • 566GRCh38
Lab
  • 566AMP-T2D consortium
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

566 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
tissue
adipose tissue38212
bone tissue58
white adipose tissue12
omental fat pad43211
subcutaneous adipose tissue6211
in vitro differentiated cells
adipocyte4481
cardiac fibroblast1
primary cell
osteoblast512
cardiac fibroblast33
mesenchymal stem cell6
pancreatic stellate cell4
mesenchymal stem cell of adipose11
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