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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 97ChIP-seq
  • 76total RNA-seq
  • 70single cell RNA-seq
  • 34ATAC-seq
  • 17DNase-seq
Assay category
  • 146Transcription
  • 97DNA binding
  • 51DNA accessibility
Target of assay
  • 88histone
  • 88histone modification
  • 48narrow histone mark
  • 40broad histone mark
  • 9transcription factor
  • 8RNA binding protein
  • 1chromatin remodeller
Date released
  • 61September, 2018
  • 33April, 2018
  • 33July, 2018
  • 26February, 2021
  • 23October, 2019
  • 18June, 2019
  • 17August, 2017
  • 16December, 2017
  • 13November, 2019
  • 9May, 2021
  • 7August, 2020
  • 5December, 2019
  • 5July, 2019
  • 5September, 2017
  • 4May, 2019
  • 4November, 2017
  • 3August, 2018
  • 3August, 2021
  • 3March, 2020
  • 3September, 2020
  • 2October, 2018
  • 1June, 2018
Available data
  • 292bigWig
  • 284bam
  • 181fastq
  • 146tsv
  • 138bed narrowPeak
  • 75bigBed narrowPeak
  • 20bed broadPeak
  • 20bigBed broadPeak
  • 19bed bed3+
  • 5tagAlign
Organism
  • 294Homo sapiens
Biosample type
  • 225primary cell
  • 49cell line
  • 20in vitro differentiated cells
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 280AMP
  • 10HPAP
  • 4T1D
Genome assembly (visualization)
  • 311hg19
  • 294GRCh38
Lab
  • 284AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
Audit category:
  • 57inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

294 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell7101213
pancreatic beta cell7101210
pancreatic ductal cell134104
pancreatic acinar cell84125
endothelial cell of umbilical vein102
cell line
EndoC_BH113331
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte14
Hepatic endoderm2
pancreatic PP cell2
endothelial cell1
intermediate endothelial cell1
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