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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 113ChIP-seq
  • 69total RNA-seq
  • 47ATAC-seq
  • 30DNase-seq
  • 6WGBS
  • 1small RNA-seq
Assay category
  • 113DNA binding
  • 77DNA accessibility
  • 70Transcription
  • 6DNA methylation
Target of assay
  • 96histone
  • 96histone modification
  • 57broad histone mark
  • 39narrow histone mark
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 64February, 2021
  • 46April, 2019
  • 40May, 2024
  • 35February, 2023
  • 33June, 2019
  • 21July, 2019
  • 15May, 2019
  • 7October, 2019
  • 3May, 2021
  • 2March, 2020
Available data
  • 223bigWig
  • 191bam
  • 190bed narrowPeak
  • 94bigBed narrowPeak
  • 70tsv
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 4tagAlign
Organism
  • 266Homo sapiens
Biosample type
  • 191tissue
  • 64cell line
  • 10primary cell
  • 1in vitro differentiated cells
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 266AMP
Genome assembly (visualization)
  • 266GRCh38
  • 188hg19
Lab
  • 226AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 4inconsistent ontology term
BIOSAMPLE
ASSAY

266 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
coronary artery3362
left cardiac atrium401
heart left ventricle283232
heart1241811
heart right ventricle11112
cell line
smooth muscle cell of the coronary artery4528
primary cell
cardiac fibroblast33
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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