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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79DNase-seq
  • 75ATAC-seq
  • 39ChIP-seq
  • 11total RNA-seq
  • 1small RNA-seq
Assay category
  • 154DNA accessibility
  • 39DNA binding
  • 12Transcription
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 9transcription factor
  • 7recombinant protein
  • 2RNA binding protein
Date released
  • 80June, 2019
  • 64August, 2021
  • 22October, 2019
  • 18April, 2019
  • 11May, 2023
  • 6July, 2019
  • 4May, 2019
Available data
  • 182bed narrowPeak
  • 130bam
  • 130bigWig
  • 103bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 12tsv
Organism
  • 205Homo sapiens
Biosample type
  • 165tissue
  • 28primary cell
  • 12cell line
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 205AMP
Genome assembly (visualization)
  • 205GRCh38
  • 129hg19
Lab
  • 130AMP-T2D consortium
  • 75Katalin Susztak, Upenn
Audit category:
  • 15inconsistent ontology term
BIOSAMPLE
ASSAY

205 results

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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
total RNA-seq
small RNA-seq
tissue
kidney137520
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule181
kidney epithelial cell141
kidney tubule cell21
glomerular endothelial cell11
glomerular visceral epithelial cell2
cell line
RCC 7860 HIF1a re-expression31
RCC 7860 HIF2a over-expression21
RCC 7860 vector21
glomerular visceral epithelial cell11
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