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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 360ChIP-seq
  • 159total RNA-seq
  • 5DNase-seq
  • 3ATAC-seq
  • 3small RNA-seq
  • 1WGBS
Assay category
  • 360DNA binding
  • 162Transcription
  • 8DNA accessibility
  • 1DNA methylation
Target of assay
  • 286transcription factor
  • 81recombinant protein
  • 70histone modification
  • 69histone
  • 51RNA binding protein
  • 41narrow histone mark
  • 28broad histone mark
  • 21chromatin remodeller
  • 2other context
  • 2other post-translational modification
  • 1control
Date released
  • 217November, 2017
  • 162May, 2020
  • 52November, 2018
  • 50December, 2017
  • 19August, 2017
  • 7July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3August, 2021
  • 2June, 2019
  • 1February, 2021
  • 1March, 2020
Available data
  • 531bam
  • 528bigWig
  • 367bed narrowPeak
  • 343fastq
  • 326bigBed narrowPeak
  • 162tsv
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 31tagAlign
  • 11bed bed3+
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 531Homo sapiens
Biosample type
  • 268cell line
  • 238tissue
  • 14in vitro differentiated cells
  • 11primary cell
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 531AMP
Genome assembly (visualization)
  • 625hg19
  • 531GRCh38
Lab
  • 531AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 5missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 6inconsistent control run_type
BIOSAMPLE
ASSAY

531 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2261511
tissue
liver7514721
right lobe of liver72112
in vitro differentiated cells
hepatocyte14
primary cell
hepatocyte351
Liver fetal (hepatocyte)1
hepatic stellate cell1
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