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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 324total RNA-seq
  • 157ChIP-seq
  • 80single cell RNA-seq
  • 59ATAC-seq
  • 8DNase-seq
  • 4WGBS
  • 2small RNA-seq
  • 1Hi-C
Assay category
  • 406Transcription
  • 157DNA binding
  • 67DNA accessibility
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 136histone
  • 136histone modification
  • 69broad histone mark
  • 67narrow histone mark
  • 19transcription factor
  • 9RNA binding protein
  • 2control
Date released
  • 153July, 2018
  • 152August, 2017
  • 72September, 2018
  • 51November, 2019
  • 43May, 2021
  • 42October, 2018
  • 39April, 2018
  • 26February, 2021
  • 8October, 2019
  • 7August, 2020
  • 7September, 2017
  • 6March, 2020
  • 6November, 2018
  • 5October, 2017
  • 4July, 2019
  • 4June, 2019
  • 3August, 2018
  • 3September, 2020
  • 2March, 2019
  • 1June, 2018
  • 1May, 2019
Available data
  • 621bam
  • 611bigWig
  • 406tsv
  • 357fastq
  • 188bed narrowPeak
  • 89bigBed narrowPeak
  • 29bed bed3+
  • 14bed broadPeak
  • 8tagAlign
  • 7bigBed broadPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hdf5
Organism
  • 629Homo sapiens
Biosample type
  • 386tissue
  • 192primary cell
  • 55cell line
  • 2in vitro differentiated cells
Organ
  • 635pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 294epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 619AMP
  • 10HPAP
  • 6T1D
Genome assembly (visualization)
  • 658hg19
  • 635GRCh38
Lab
  • 622AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 52inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

635 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
tissue
islet of Langerhans260256221
body of pancreas2264422
pancreas11322
endocrine pancreas14
primary cell
pancreatic alpha cell1071213
pancreatic beta cell1071210
pancreatic ductal cell413104
pancreatic acinar cell48125
pancreatic endocrine cell23
cell line
EndoC_BH133131
Panc1611
in vitro differentiated cells
pancreatic PP cell2
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