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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1209total RNA-seq
  • 103single cell RNA-seq
  • 18small RNA-seq
  • 6ChIP-seq
Assay category
  • 1330Transcription
  • 6DNA binding
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 544February, 2021
  • 173May, 2021
  • 164July, 2018
  • 143May, 2020
  • 95August, 2017
  • 49April, 2018
  • 49July, 2019
  • 26September, 2018
  • 20November, 2019
  • 15August, 2021
  • 15February, 2018
  • 13March, 2020
  • 12October, 2019
  • 5December, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1May, 2023
Available data
  • 1335bam
  • 1335bigWig
  • 1329tsv
  • 238fastq
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 6tagAlign
Organism
  • 1330Homo sapiens
Biosample type
  • 920tissue
  • 190primary cell
  • 127in vitro differentiated cells
  • 99cell line
Organ
  • 469connective tissue
  • 412pancreas
  • 398adipose tissue
  • 157liver
  • 141epithelium
  • 66heart
  • 58bone element
  • 56blood vessel
  • 56vasculature
  • 52artery
  • 14embryo
  • 9brain
  • 8kidney
  • 5musculature of body
Project
  • 1283AMP
  • 53T1D
Genome assembly (visualization)
  • 1338hg19
  • 1336GRCh38
Lab
  • 1285AMP-T2D consortium
  • 51Kyle Gaulton, UCSD
Audit category:
  • 130inconsistent ontology term
Audit category:
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1336 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
ChIP-seq
tissue
adipose tissue382
islet of Langerhans2606
liver1471
bone tissue58
pancreas16
primary cell
monocyte51
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte4
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
H1-hESC8
early embryonic cell2
RCC 7860 HIF1a re-expression1
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