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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1266ChIP-seq
  • 234ATAC-seq
  • 207DNase-seq
  • 68total RNA-seq
  • 17WGBS
  • 3single cell RNA-seq
  • 2Hi-C
Assay category
  • 1266DNA binding
  • 441DNA accessibility
  • 71Transcription
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 448transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 280November, 2017
  • 210June, 2019
  • 195October, 2019
  • 160August, 2017
  • 103May, 2021
  • 96May, 2019
  • 90August, 2021
  • 79November, 2018
  • 77December, 2017
  • 64April, 2019
  • 64May, 2020
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 37November, 2019
  • 35February, 2023
  • 30December, 2018
  • 30July, 2019
  • 26January, 2019
  • 24February, 2021
  • 16February, 2018
  • 14October, 2017
  • 11May, 2023
  • 7August, 2020
  • 7September, 2017
  • 3March, 2020
  • 3September, 2020
  • 2March, 2019
  • 2November, 2020
  • 1March, 2023
Available data
  • 1632bed narrowPeak
  • 1630bam
  • 1601bigWig
  • 998bigBed narrowPeak
  • 719fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 71tsv
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 1791Homo sapiens
Biosample type
  • 945tissue
  • 365cell line
  • 346primary cell
  • 138in vitro differentiated cells
  • 3stem cell
Organ
  • 374liver
  • 229pancreas
  • 208brain
  • 200heart
  • 197kidney
  • 153epithelium
  • 135vasculature
  • 131blood vessel
  • 97connective tissue
  • 96limb
  • 76artery
  • 54blood
  • 54bodily fluid
  • 48musculature of body
  • 31nerve
  • 26adipose tissue
  • 18ureter
  • 16spleen
  • 15embryo
  • 12vein
  • 8bone element
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 1653AMP
  • 133T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 1881hg19
  • 1797GRCh38
  • 5hg18
Lab
  • 1539AMP-T2D consortium
  • 129Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 66inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

1797 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
single cell RNA-seq
Hi-C
tissue
kidney207513
liver752
islet of Langerhans25221
coronary artery3362
left cardiac atrium401
cell line
HepG2261151
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc1611
primary cell
monocyte84132
pancreatic endocrine cell23
pancreatic alpha cell713
pancreatic beta cell710
pancreatic ductal cell134
in vitro differentiated cells
adipocyte481
neural progenitor cell1310
hepatocyte14
pancreatic endoderm13
definitive endodermal cell7
stem cell
hESC3
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