Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1135total RNA-seq
  • 1118ChIP-seq
  • 219ATAC-seq
  • 182DNase-seq
  • 21single cell RNA-seq
  • 17WGBS
  • 7small RNA-seq
  • 1Hi-C
Assay category
  • 1163Transcription
  • 1118DNA binding
  • 401DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 681histone modification
  • 680histone
  • 427transcription factor
  • 356broad histone mark
  • 323narrow histone mark
  • 97RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 8control
  • 5other context
  • 5other post-translational modification
Date released
  • 561February, 2021
  • 280November, 2017
  • 216August, 2017
  • 181June, 2019
  • 172May, 2021
  • 166May, 2020
  • 163October, 2019
  • 120July, 2018
  • 96May, 2019
  • 78November, 2018
  • 75December, 2017
  • 72August, 2021
  • 72September, 2018
  • 64April, 2019
  • 56November, 2019
  • 46October, 2018
  • 45July, 2019
  • 40May, 2024
  • 35February, 2023
  • 30December, 2018
  • 30February, 2018
  • 26January, 2019
  • 13March, 2020
  • 13October, 2017
  • 12May, 2023
  • 10April, 2018
  • 7August, 2020
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 3September, 2020
  • 2June, 2018
Available data
  • 2537bam
  • 2522bigWig
  • 1465bed narrowPeak
  • 1162tsv
  • 964bigBed narrowPeak
  • 826fastq
  • 257bed broadPeak
  • 243bigBed broadPeak
  • 197bed bed3+
  • 144tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 1bed bed3
  • 1hdf5
Organism
  • 2694Homo sapiens
Biosample type
  • 1723tissue
  • 464cell line
  • 315primary cell
  • 195in vitro differentiated cells
  • 3stem cell
Organ
  • 535pancreas
  • 529connective tissue
  • 520liver
  • 412adipose tissue
  • 249heart
  • 220epithelium
  • 192kidney
  • 189vasculature
  • 185blood vessel
  • 168brain
  • 126artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 49musculature of body
  • 31nerve
  • 27embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 4eye
Project
  • 2616AMP
  • 74T1D
  • 10HPAP
Genome assembly (visualization)
  • 2719hg19
  • 2700GRCh38
  • 5hg18
Lab
  • 2505AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 70Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
Audit category:
  • 163inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 65missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

2700 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
tissue
adipose tissue38212
islet of Langerhans258319
liver1457011
kidney207511
bone tissue58
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
primary cell
monocyte283813
pancreatic alpha cell107131
pancreatic beta cell107101
pancreatic endocrine cell23
pancreatic ductal cell41341
in vitro differentiated cells
cardiomyocytes473
adipocyte4411
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
hepatocyte14
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego