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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1226total RNA-seq
  • 792ChIP-seq
  • 208ATAC-seq
  • 187DNase-seq
  • 102single cell RNA-seq
  • 18small RNA-seq
  • 16WGBS
  • 1Hi-C
Assay category
  • 1346Transcription
  • 792DNA binding
  • 395DNA accessibility
  • 16DNA methylation
  • 13D chromatin structure
Target of assay
  • 684histone modification
  • 683histone
  • 349narrow histone mark
  • 333broad histone mark
  • 104transcription factor
  • 34RNA binding protein
  • 4chromatin remodeller
  • 4control
  • 3other context
  • 3other post-translational modification
Date released
  • 547February, 2021
  • 275May, 2021
  • 235August, 2017
  • 207May, 2020
  • 179June, 2019
  • 163July, 2018
  • 151October, 2019
  • 97August, 2021
  • 84May, 2019
  • 75July, 2019
  • 72September, 2018
  • 63April, 2019
  • 57November, 2017
  • 49April, 2018
  • 40May, 2024
  • 40October, 2018
  • 35February, 2023
  • 34November, 2019
  • 31February, 2018
  • 20November, 2018
  • 19December, 2017
  • 14October, 2017
  • 12May, 2023
  • 10March, 2020
  • 7August, 2020
  • 7September, 2017
  • 6January, 2019
  • 6November, 2020
  • 3August, 2018
  • 3December, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2384bigWig
  • 2383bam
  • 1345tsv
  • 1117bed narrowPeak
  • 545bigBed narrowPeak
  • 542fastq
  • 224bed bed3+
  • 224tagAlign
  • 201bed broadPeak
  • 186bigBed broadPeak
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 1bed bed3
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2544Homo sapiens
Biosample type
  • 1769tissue
  • 462primary cell
  • 210in vitro differentiated cells
  • 109cell line
Organ
  • 597pancreas
  • 562connective tissue
  • 424adipose tissue
  • 253heart
  • 237epithelium
  • 205liver
  • 197brain
  • 181kidney
  • 161blood vessel
  • 161vasculature
  • 122artery
  • 92limb
  • 66bone element
  • 44musculature of body
  • 31nerve
  • 18embryo
  • 18ureter
  • 16spleen
  • 8skeleton
  • 3eye
  • 2blood
  • 2bodily fluid
  • 1pericardium
  • 1pituitary gland
  • 1vein
Project
  • 2357AMP
  • 182T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2550GRCh38
  • 2549hg19
  • 5hg18
Lab
  • 2241AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 139inconsistent ontology term
Audit category:
  • 74missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

2550 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans26025316
liver1463921
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes593
adipocyte448
neural progenitor cell71310
pancreatic endoderm410
induced pluripotent stem cell9
cell line
smooth muscle cell of the coronary artery5228
EndoC_BH131111
GM128782
early embryonic cell1
iPSC derived cell line1
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