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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 622ChIP-seq
  • 193total RNA-seq
  • 89single cell RNA-seq
  • 45DNase-seq
  • 41ATAC-seq
  • 11small RNA-seq
  • 2Hi-C
  • 1WGBS
Assay category
  • 622DNA binding
  • 293Transcription
  • 86DNA accessibility
  • 23D chromatin structure
  • 1DNA methylation
Target of assay
  • 365transcription factor
  • 243histone
  • 243histone modification
  • 148narrow histone mark
  • 95broad histone mark
  • 88recombinant protein
  • 69RNA binding protein
  • 30chromatin remodeller
  • 12control
  • 2other context
  • 2other post-translational modification
Date released
  • 223November, 2017
  • 105May, 2021
  • 100October, 2019
  • 60December, 2017
  • 60June, 2019
  • 60November, 2018
  • 47August, 2017
  • 45July, 2018
  • 41August, 2021
  • 41May, 2020
  • 39April, 2018
  • 38July, 2019
  • 28February, 2021
  • 27December, 2018
  • 24November, 2019
  • 20January, 2019
  • 12May, 2019
  • 9March, 2020
  • 8October, 2018
  • 5December, 2019
  • 3August, 2018
  • 2March, 2019
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1October, 2017
Available data
  • 998bam
  • 954bigWig
  • 682bed narrowPeak
  • 534fastq
  • 487bigBed narrowPeak
  • 293tsv
  • 124tagAlign
  • 106bed broadPeak
  • 105bigBed broadPeak
  • 95bed bed3+
  • 2bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 1004Homo sapiens
Biosample type
  • 355cell line
  • 295primary cell
  • 226tissue
  • 125in vitro differentiated cells
  • 3stem cell
Organ
  • 337liver
  • 138pancreas
  • 131epithelium
  • 69brain
  • 52blood
  • 52bodily fluid
  • 41connective tissue
  • 37kidney
  • 32vasculature
  • 30heart
  • 28blood vessel
  • 13embryo
  • 13musculature of body
  • 12adipose tissue
  • 11vein
  • 8artery
  • 5eye
  • 4limb
  • 1pericardium
  • 1pituitary gland
Project
  • 887AMP
  • 116T1D
  • 1ITG
Genome assembly (visualization)
  • 1158hg19
  • 1004GRCh38
Lab
  • 890AMP-T2D consortium
  • 110Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 90inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 19missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1004 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2261511
GM1287852
H1-hESC8
Panc1611
EndoC_BH122
primary cell
monocyte4625
skeletal muscle myoblast131
endothelial cell of umbilical vein101
pancreatic alpha cell11
pancreatic beta cell11
tissue
islet of Langerhans2226122
liver4131
heart5341
brain512
body of pancreas7
in vitro differentiated cells
neural progenitor cell13710
cardiac precursors (cardiac muscle cell)191
hepatocyte14
cardiomyocytes12
induced pluripotent stem cell9
stem cell
hESC3
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