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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 148ChIP-seq
  • 142total RNA-seq
  • 85single cell RNA-seq
  • 25DNase-seq
  • 15ATAC-seq
  • 11small RNA-seq
  • 1Hi-C
Assay category
  • 238Transcription
  • 148DNA binding
  • 40DNA accessibility
  • 13D chromatin structure
Target of assay
  • 123histone
  • 123histone modification
  • 87narrow histone mark
  • 36broad histone mark
  • 21transcription factor
  • 4control
  • 3RNA binding protein
Date released
  • 104May, 2021
  • 44July, 2018
  • 44October, 2019
  • 41May, 2020
  • 39April, 2018
  • 34July, 2019
  • 33August, 2017
  • 33August, 2021
  • 29June, 2019
  • 7February, 2021
  • 3August, 2018
  • 3March, 2020
  • 2December, 2017
  • 2March, 2019
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2018
Available data
  • 422bam
  • 408bigWig
  • 238tsv
  • 167bed narrowPeak
  • 125fastq
  • 102tagAlign
  • 61bed bed3+
  • 34bigBed narrowPeak
  • 25bed broadPeak
  • 24bigBed broadPeak
  • 1bed bed3
  • 1hic
  • 1tagAlign bed3+
Organism
  • 427Homo sapiens
Biosample type
  • 221primary cell
  • 136tissue
  • 70in vitro differentiated cells
Organ
  • 100pancreas
  • 74epithelium
  • 49brain
  • 37connective tissue
  • 17heart
  • 13kidney
  • 12adipose tissue
  • 11liver
  • 4musculature of body
  • 2artery
  • 2blood vessel
  • 2embryo
  • 2eye
  • 2vasculature
  • 1pericardium
  • 1pituitary gland
Project
  • 314AMP
  • 112T1D
  • 1ITG
Genome assembly (visualization)
  • 494hg19
  • 427GRCh38
Lab
  • 313AMP-T2D consortium
  • 110Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

427 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
primary cell
monocyte4625
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
tissue
islet of Langerhans222613
liver521
heart241
frontal cortex121
white adipose tissue4
in vitro differentiated cells
neural progenitor cell13710
cardiomyocytes12
induced pluripotent stem cell9
adipocyte7
cardiac fibroblast1
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