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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474ChIP-seq
  • 51total RNA-seq
  • 26ATAC-seq
  • 20DNase-seq
  • 4single cell RNA-seq
  • 1Hi-C
  • 1WGBS
Assay category
  • 474DNA binding
  • 55Transcription
  • 46DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 344transcription factor
  • 120histone
  • 120histone modification
  • 88recombinant protein
  • 66RNA binding protein
  • 61narrow histone mark
  • 59broad histone mark
  • 30chromatin remodeller
  • 8control
  • 2other context
  • 2other post-translational modification
Date released
  • 223November, 2017
  • 59November, 2018
  • 58December, 2017
  • 56October, 2019
  • 31June, 2019
  • 27December, 2018
  • 23November, 2019
  • 21February, 2021
  • 20January, 2019
  • 14August, 2017
  • 12May, 2019
  • 8August, 2021
  • 7October, 2018
  • 6March, 2020
  • 5December, 2019
  • 4July, 2019
  • 1April, 2019
  • 1July, 2018
  • 1May, 2021
Available data
  • 576bam
  • 546bigWig
  • 515bed narrowPeak
  • 453bigBed narrowPeak
  • 409fastq
  • 81bed broadPeak
  • 81bigBed broadPeak
  • 55tsv
  • 34bed bed3+
  • 22tagAlign
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 577Homo sapiens
Biosample type
  • 355cell line
  • 90tissue
  • 74primary cell
  • 55in vitro differentiated cells
  • 3stem cell
Organ
  • 326liver
  • 57epithelium
  • 52blood
  • 52bodily fluid
  • 38pancreas
  • 30vasculature
  • 26blood vessel
  • 24kidney
  • 20brain
  • 13heart
  • 11embryo
  • 11vein
  • 9musculature of body
  • 6artery
  • 4connective tissue
  • 4limb
  • 3eye
Project
  • 573AMP
  • 4T1D
Genome assembly (visualization)
  • 664hg19
  • 577GRCh38
Lab
  • 577AMP-T2D consortium
Audit category:
  • 57inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 5missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

577 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
cell line
HepG2261511
GM1287852
H1-hESC8
Panc1611
EndoC_BH122
tissue
liver361
islet of Langerhans19
body of pancreas7
brain51
heart51
primary cell
skeletal muscle myoblast131
endothelial cell of umbilical vein101
skeletal muscle satellite cell7
hepatocyte5
kidney epithelial cell41
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)191
hepatocyte14
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Posterior foregut3
cardiomyocytes (cardiac muscle cell)21
stem cell
hESC3
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