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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1084total RNA-seq
  • 644ChIP-seq
  • 193ATAC-seq
  • 162DNase-seq
  • 17single cell RNA-seq
  • 16WGBS
  • 7small RNA-seq
Assay category
  • 1108Transcription
  • 644DNA binding
  • 355DNA accessibility
  • 16DNA methylation
Target of assay
  • 561histone modification
  • 560histone
  • 297broad histone mark
  • 262narrow histone mark
  • 83transcription factor
  • 31RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 540February, 2021
  • 202August, 2017
  • 171May, 2021
  • 166May, 2020
  • 150June, 2019
  • 119July, 2018
  • 107October, 2019
  • 84May, 2019
  • 72September, 2018
  • 64August, 2021
  • 63April, 2019
  • 57November, 2017
  • 41July, 2019
  • 40May, 2024
  • 39October, 2018
  • 35February, 2023
  • 33November, 2019
  • 30February, 2018
  • 19November, 2018
  • 17December, 2017
  • 13October, 2017
  • 12May, 2023
  • 10April, 2018
  • 7August, 2020
  • 7March, 2020
  • 6January, 2019
  • 6November, 2020
  • 5September, 2017
  • 3December, 2018
  • 3September, 2020
  • 2June, 2018
Available data
  • 1976bigWig
  • 1961bam
  • 1107tsv
  • 950bed narrowPeak
  • 511bigBed narrowPeak
  • 417fastq
  • 176bed broadPeak
  • 163bed bed3+
  • 162bigBed broadPeak
  • 122tagAlign
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
Organism
  • 2117Homo sapiens
Biosample type
  • 1633tissue
  • 241primary cell
  • 140in vitro differentiated cells
  • 109cell line
Organ
  • 525connective tissue
  • 497pancreas
  • 412adipose tissue
  • 236heart
  • 194liver
  • 168kidney
  • 163epithelium
  • 159blood vessel
  • 159vasculature
  • 148brain
  • 120artery
  • 92limb
  • 66bone element
  • 40musculature of body
  • 31nerve
  • 18ureter
  • 16embryo
  • 16spleen
  • 8skeleton
  • 2blood
  • 2bodily fluid
  • 1eye
  • 1vein
Project
  • 2043AMP
  • 70T1D
  • 10HPAP
Genome assembly (visualization)
  • 2123GRCh38
  • 2055hg19
  • 5hg18
Lab
  • 1928AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 70Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
Audit category:
  • 106inconsistent ontology term
Audit category:
  • 60missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

2123 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
tissue
adipose tissue38212
islet of Langerhans2583
liver1443411
kidney207511
bone tissue58
primary cell
monocyte283813
pancreatic alpha cell107131
pancreatic beta cell107101
pancreatic endocrine cell23
pancreatic ductal cell41341
in vitro differentiated cells
cardiomyocytes473
adipocyte441
pancreatic endoderm410
definitive endodermal cell24
primitive gut cell24
cell line
smooth muscle cell of the coronary artery5228
EndoC_BH131111
GM128782
early embryonic cell1
iPSC derived cell line1
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