Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 869chromatin state
  • 392accessible chromatin
  • 285target gene predictions
  • 105histone modifications
  • 72Fine-mapped variants
  • 38candidate regulatory elements
  • 24eQTL
  • 9gene expression
  • 7caQTL
  • 6binding sites
Date released
  • 839September, 2022
  • 333November, 2021
  • 216February, 2024
  • 97May, 2021
  • 72March, 2020
  • 68January, 2020
  • 38May, 2024
  • 33August, 2021
  • 24February, 2020
  • 13November, 2019
  • 13October, 2019
  • 11February, 2021
  • 11May, 2020
  • 9May, 2019
  • 7April, 2019
  • 6February, 2023
  • 6May, 2022
  • 4January, 2022
  • 3September, 2018
  • 2November, 2020
  • 2October, 2022
Available data
  • 864bed bed9
  • 838bed bed3+
  • 382bigWig
  • 105tsv
  • 31bigBed bed9
Organism
  • 1806Homo sapiens
Collection Tags
  • 833EpiMap
  • 385AMP
  • 357T2DKP
  • 1744DN
  • 100T1D
  • 97BLUEPRINT
  • 96GTEx
  • 64DGA
  • 26FNIH_projects-heart
  • 24 T2DKP
  • 12FNIH_projects-liver
  • 12HPAP
  • 6CMDGA
  • 6ENCODE
Biosample type
  • 710primary cell
  • 677tissue
  • 355cell line
  • 65in vitro differentiated cells
Organ
  • 243epithelium
  • 135brain
  • 124connective tissue
  • 104kidney
  • 95musculature of body
  • 92heart
  • 87vasculature
  • 80embryo
  • 79lung
  • 76intestine
  • 76limb
  • 71blood vessel
  • 61liver
  • 57pancreas
  • 57uterus
  • 53bodily fluid
  • 51blood
  • 44skin of body
  • 41large intestine
  • 36extraembryonic component
  • 32stomach
  • 25artery
  • 24adrenal gland
  • 23bone element
  • 23small intestine
  • 20adipose tissue
  • 20mammary gland
  • 18placenta
  • 16ureter
  • 15eye
  • 13prostate gland
  • 12spinal cord
  • 12thymus
  • 11esophagus
  • 11skeleton
  • 10gonad
  • 10nerve
  • 10penis
  • 8lymph node
  • 8lymphatic vessel
  • 7spleen
  • 6lymphoid tissue
  • 6ovary
  • 6thyroid gland
  • 5vein
  • 4bronchus
  • 4mouth
  • 4testis
  • 2bone marrow
  • 2breast
  • 2tongue
  • 2urinary bladder
  • 2vagina
  • 1nose
Project
  • 1471AMP
  • 333ENCODE
  • 3T1D
Genome assembly (visualization)
  • 6996hg19
  • 1807GRCh38
  • 4hg18
software_used.software.name!
  • qTLtools
BIOSAMPLE
TYPE

1807 results

search-icontable-tab-icon
Clear Filters
chromatin state
accessible chromatin
target gene predictions
histone modifications
Fine-mapped variants
candidate regulatory elements
eQTL
gene expression
caQTL
binding sites
primary cell
monocyte1384
fibroblast1643
endothelial cell11631
pericyte cell1992
hepatocyte171315
tissue
kidney169
heart213
brain181
stomach19
muscle of arm161
cell line
HeLa-S3351
H1-hESC137
K562616
HFFc619
A54918
in vitro differentiated cells
neural progenitor cell41013
hematopoietic multipotent progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)2
adipocyte2
cardiac muscle cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego