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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 874ChIP-seq
  • 234ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 874DNA binding
  • 441DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 448transcription factor
  • 410narrow histone mark
  • broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 235November, 2017
  • 232May, 2021
  • 207May, 2020
  • 202June, 2019
  • 200August, 2017
  • 164July, 2018
  • 157October, 2019
  • 98August, 2021
  • 79July, 2019
  • 79November, 2018
  • 62December, 2017
  • 55September, 2018
  • 51November, 2019
  • 49April, 2018
  • 38May, 2019
  • 35February, 2023
  • 30December, 2018
  • 28October, 2018
  • 27April, 2019
  • 23February, 2018
  • 22January, 2019
  • 20May, 2024
  • 16March, 2020
  • 12May, 2023
  • 9October, 2017
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2587bam
  • 2539bigWig
  • 1400tsv
  • 1245bed narrowPeak
  • 835fastq
  • 756bigBed narrowPeak
  • 261bed broadPeak
  • 254bigBed broadPeak
  • 246bed bed3+
  • 144tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2733Homo sapiens
Biosample type
  • 1617tissue
  • 448cell line
  • 440primary cell
  • 228in vitro differentiated cells
  • 2stem cell
Organ
  • 566pancreas
  • 550connective tissue
  • 503liver
  • 424adipose tissue
  • 254epithelium
  • 209heart
  • 190kidney
  • 156brain
  • 150vasculature
  • 146blood vessel
  • 114artery
  • 66bone element
  • 62limb
  • 54blood
  • 54bodily fluid
  • 45musculature of body
  • 25embryo
  • 18ureter
  • 15nerve
  • 12spleen
  • 8skeleton
  • 7vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2582AMP
  • 142T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2842hg19
  • 2735GRCh38
  • 5hg18
Lab
  • 2490AMP-T2D consortium
  • 136Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 20Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 182inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 55missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 7inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

2735 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260192216
liver1476521
kidney107513
bone tissue58
cell line
HepG2525411
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH13371
H1-hESC8
primary cell
monocyte534013
pancreatic alpha cell1041312
pancreatic beta cell1041012
pancreatic acinar cell44512
pancreatic ductal cell47410
in vitro differentiated cells
cardiomyocytes593
adipocyte4361
neural progenitor cell7710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm49
stem cell
hESC2
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