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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 462ChIP-seq
  • 234ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 462DNA binding
  • 441DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • histone modification
  • 803histone
  • 448transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 207November, 2017
  • 191June, 2019
  • 190May, 2021
  • 188May, 2020
  • 164July, 2018
  • 146August, 2017
  • 89August, 2021
  • 79July, 2019
  • 79November, 2018
  • 49April, 2018
  • 47December, 2017
  • 47November, 2019
  • 40September, 2018
  • 38October, 2019
  • 35February, 2023
  • 30December, 2018
  • 19January, 2019
  • 17October, 2018
  • 15February, 2018
  • 13March, 2020
  • 12May, 2023
  • 8October, 2017
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5April, 2019
  • 5December, 2019
  • 5May, 2019
  • 5May, 2024
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2192bam
  • 2129bigWig
  • 1400tsv
  • 845bed narrowPeak
  • 725fastq
  • 608bigBed narrowPeak
  • 242bed broadPeak
  • 241bigBed broadPeak
  • 233bed bed3+
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 9tagAlign
  • 2bed bed3
  • 1hdf5
  • 1hic
Organism
  • 2323Homo sapiens
Biosample type
  • 1365tissue
  • 432cell line
  • 338primary cell
  • 187in vitro differentiated cells
  • 1stem cell
Organ
  • 532connective tissue
  • 499pancreas
  • 461liver
  • 423adipose tissue
  • 206epithelium
  • 175kidney
  • 170heart
  • 125vasculature
  • 122blood vessel
  • 108artery
  • 66bone element
  • 53blood
  • 53bodily fluid
  • 49brain
  • 49limb
  • 40musculature of body
  • 18embryo
  • 18ureter
  • 10spleen
  • 8skeleton
  • 7nerve
  • 5eye
  • 2vein
  • 1pericardium
Project
  • 2214AMP
  • 98T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2429hg19
  • 2323GRCh38
  • 5hg18
Lab
  • 2133AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 10Klaus Kaestner, Upenn
  • 5Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 163inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 27missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 6inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

2323 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue3822
islet of Langerhans26092216
liver1473821
kidney7513
bone tissue58
cell line
HepG2524811
smooth muscle cell of the coronary artery5248
GM1287853
EndoC_BH13311
H1-hESC8
primary cell
monocyte5313
pancreatic alpha cell101312
pancreatic beta cell101012
pancreatic acinar cell4512
pancreatic ductal cell4410
in vitro differentiated cells
cardiomyocytes593
adipocyte4231
cardiac precursors (cardiac muscle cell)191
neural progenitor cell710
induced pluripotent stem cell9
stem cell
hESC1
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